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Philippe Bordron's avatar
feat: Update API
Philippe Bordron authored 
- Remove custom resolver that recomputes aligned sequences and position depending to sequence selection
- Add aligned position
- Add alignement

Missing the
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.gitlab/issue_templates
documents/legal
server
static
test/utilsTests/resolvers
.gitignore
LICENSE
README.md
compose.yml
package-lock.json
package.json
README.md

Install

Pull images

docker compose pull

Install api packages

USER_ID=$(id -u) GROUP_ID=$(id -g) docker compose --profile init up

Run

Before running anything, create a file named auth.env where you set the database user and password by defining the environment variable NEO4J_AUTH=<user>/<password> where you replace <user> and <password> by the right values. If the database does not exist, those values will be used to create it.

Run dev

NODE_ENV="dev" USER_ID=$(id -u) GROUP_ID=$(id -g) docker compose --profile dev up

Run api standalone

USER_ID=$(id -u) GROUP_ID=$(id -g) docker compose --profile api-standalone up

Run database standalone

USER_ID=$(id -u) GROUP_ID=$(id -g) docker compose --profile db-standalone up

Purge

USER_ID=$(id -u) GROUP_ID=$(id -g) docker compose --profile db-standalone rm

sudo rm -rf neo4j/data

Export database

Run docker compose in such a way:

USER_ID=$(id -u) GROUP_ID=$(id -g) docker compose run --rm neo4j-import neo4j-admin database dump neo4j --to-path=/import/

Import database

Run docker compose in such a way:

docker compose run --rm neo4j-import neo4j-admin database load neo4j --from-path=/import/ --overwrite-destination=true